Zengler K et al. EcoFAB: Advancing microbiome science through standardized fabricated ecosystems. Nature Methods. In press. (doi: https://doi.org/10.1038/s41592-019-0465-0).

Hsu RH, Clark RL, Tan JW, Ahn CJ, Gupta G, Romero PA and Venturelli OS. Rapid microbial interaction network inference in microfluidic droplets. Cell Systems. In press (bioRxiv doi: https://doi.org/10.1101/521823)

Shin S, Venturelli OS and Zavala V (2019). Scalable Nonlinear Programming Framework for Parameter Estimation in Dynamic Biological System Models. PLoS Comp Biol, 15(3), e1006828.

Cao X+, Hamilton JJ+ and Venturelli OS (2019). Understanding and controlling distributed biochemical pathways in microbial communities. Biochemistry 58(2), 94-107.
See also: Introducing Future of Biochemistry: The International Issue (2019) Biochemistry 58, 1-6.
+These authors contributed equally to this work.


Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T and Arkin AP (2018). Deciphering microbial interactions in synthetic human gut microbiome communities. Mol Syst Biol 14, e8425.
See also C Abreu et al. (2018) News & Views (MSB)
Featured on the cover of MSB


Venturelli OS (2017). What Is the Role of Circuit Design in the Advancement of Synthetic Biology? Cell Systems. 4(5) 476-77. 

Venturelli OS, Tei M, Bauer S, Chan JGL, Petzold, C and Arkin AP (2017). Programming mRNA decay to modulate synthetic circuit resource allocation. Nat Commun. DOI: 10.1038/ncomms15128
See also Research Highlights (Nat Chem Biol)


Venturelli OS, Egbert RG and Arkin AP (2016). Towards engineering biological systems in a broader context. J. Mol. Biol. 428(5):928-944


Chevalier M, Venturelli OS and El-Samad H (2015). The impact of different sources of fluctuations on mutual information in biochemical networks. PLoS Comput Biol. 11(10):e1004462.

Venturelli OS, Zuleta I, Murray RM, El-Samad H (2015). Population diversification in a yeast metabolic program promotes anticipation of environmental shifts. PLoS Biol. 13(1):e1002042.

Prior to 2015

Venturelli OS, El-Samad H, Murray RM (2012). Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response. Proc Natl Acad Sci USA. 109(48):E3324-33.

Renault VM, Thekkat PU, Hoang KL, White JL, Brady CA, Kenzelmann Broz D, Venturelli OS, Johnson TM, Oskoui PR, Xuan Z, Santo EE, Zhang MQ, Vogel H, Attardi LD, Brunet A (2011). The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor. Oncogene. 30(29):3207-21

Bloom JD, Lu Z, Chen D, Raval A, Venturelli OS, Arnold FH (2007). Evolution favors protein mutational robustness in sufficiently large populations. BMC Biol. 30(29):3207-21