Gupta S, Gomez MM, Romero PA and Venturelli OS. Investigating the dynamics of microbial consortia in spatially structured environments. Submitted.

Lawson C, Harcombe W, Hatzenpichler R, Lindemann S, Löffler F, O'Malley M, Garcia Martin H, Pfleger B, Raskin L, Venturelli OS, Weissbrodt D, Noguera D, and McMahon K (2019). Common principles and best practices for engineering microbiomes. Nature Microbiology.

Zengler K et al. EcoFAB: Advancing microbiome science through standardized fabricated ecosystems. Nature Methods. (doi: https://doi.org/10.1038/s41592-019-0465-0).

Hsu RH, Clark RL, Tan JW, Ahn JC, Gupta G, Romero PA and Venturelli OS (2019). Microbial interaction network inference in microfluidic droplets. Cell Systems 9, 1-14.

Shin S, Venturelli OS and Zavala V (2019). Scalable Nonlinear Programming Framework for Parameter Estimation in Dynamic Biological System Models. PLoS Comp Biol, 15(3), e1006828.

Cao X+, Hamilton JJ+ and Venturelli OS (2019). Understanding and controlling distributed biochemical pathways in microbial communities. Biochemistry 58(2), 94-107.
See also: Introducing Future of Biochemistry: The International Issue (2019) Biochemistry 58, 1-6.
+These authors contributed equally to this work.


Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T and Arkin AP (2018). Deciphering microbial interactions in synthetic human gut microbiome communities. Mol Syst Biol 14, e8425.
See also C Abreu et al. (2018) News & Views (MSB)
Featured on the cover of MSB


Venturelli OS (2017). What Is the Role of Circuit Design in the Advancement of Synthetic Biology? Cell Systems. 4(5) 476-77. 

Venturelli OS, Tei M, Bauer S, Chan JGL, Petzold, C and Arkin AP (2017). Programming mRNA decay to modulate synthetic circuit resource allocation. Nat Commun. DOI: 10.1038/ncomms15128
See also Research Highlights (Nat Chem Biol)


Venturelli OS, Egbert RG and Arkin AP (2016). Towards engineering biological systems in a broader context. J. Mol. Biol. 428(5):928-944


Chevalier M, Venturelli OS and El-Samad H (2015). The impact of different sources of fluctuations on mutual information in biochemical networks. PLoS Comput Biol. 11(10):e1004462.

Venturelli OS, Zuleta I, Murray RM, El-Samad H (2015). Population diversification in a yeast metabolic program promotes anticipation of environmental shifts. PLoS Biol. 13(1):e1002042.

Prior to 2015

Venturelli OS, El-Samad H, Murray RM (2012). Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response. Proc Natl Acad Sci USA. 109(48):E3324-33.

Renault VM, Thekkat PU, Hoang KL, White JL, Brady CA, Kenzelmann Broz D, Venturelli OS, Johnson TM, Oskoui PR, Xuan Z, Santo EE, Zhang MQ, Vogel H, Attardi LD, Brunet A (2011). The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor. Oncogene. 30(29):3207-21

Bloom JD, Lu Z, Chen D, Raval A, Venturelli OS, Arnold FH (2007). Evolution favors protein mutational robustness in sufficiently large populations. BMC Biol. 30(29):3207-21