Gupta S, Ross TD, Gomez MM, Grant JL, Romero PA and Venturelli OS. Investigating the dynamics of microbial consortia in spatially structured environments.  Nature Commun. 11, DOI: 10.1038/s41467-020-16200-0.


Lawson, C. E., Harcombe, W. R., Hatzenpichler, R., Lindemann, S. R., Löffler, F. E., O’Malley, M. A., ... & Weissbrodt, D. G. (2019). Common principles and best practices for engineering microbiomes. Nature Reviews Microbiology, 1-17 Common principles and best practices for engineering microbiomes. Nature Reviews Microbiology, 1-17.

Zengler Karsten et al. EcoFABs: advancing microbiome science through standardized fabricated ecosystems. Nature methods 16.7 (2019): 567-571.

Hsu RH, Clark RL, Tan JW, Ahn JC, Gupta G, Romero PA and Venturelli OS. Microbial interaction network inference in microfluidic dropletsCell Systems 9, 1-14.

Shin S, Venturelli OS and Zavala V. Scalable Nonlinear Programming Framework for Parameter Estimation in Dynamic Biological System ModelsPLoS Comp Biol, 15(3), e1006828.

Cao X+, Hamilton JJ+ and Venturelli OS. Understanding and controlling distributed biochemical pathways in microbial communities. Biochemistry 58(2), 94-107.


Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T and Arkin AP. Deciphering microbial interactions in synthetic human gut microbiome communities. Mol Syst Biol 14, e8425.

See C Abreu et al. News & Views (MSB) and featured on the cover of MSB


Chevalier M, Venturelli OS and El-Samad H (2015). The impact of different sources of fluctuations on mutual information in biochemical networks. PLoS Comput Biol. 11(10):e1004462.

Venturelli OS, Zuleta I, Murray RM, El-Samad H (2015). Population diversification in a yeast metabolic program promotes anticipation of environmental shifts. PLoS Biol. 13(1):e1002042.

Prior to 2015

Venturelli OS, El-Samad H, Murray RM (2012). Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response. Proc Natl Acad Sci USA. 109(48):E3324-33.

Renault VM, Thekkat PU, Hoang KL, White JL, Brady CA, Kenzelmann Broz D, Venturelli OS, Johnson TM, Oskoui PR, Xuan Z, Santo EE, Zhang MQ, Vogel H, Attardi LD, Brunet A (2011). The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor. Oncogene. 30(29):3207-21

Bloom JD, Lu Z, Chen D, Raval A, Venturelli OS, Arnold FH (2007). Evolution favors protein mutational robustness in sufficiently large populations. BMC Biol. 30(29):3207-21


Department of Biochemistry
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440 Henry Mall
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