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Ross TD, Klausmeier CA and Venturelli OS. Metabolic interplay drives population cycles in a cross-feeding microbial community. Submitted. 

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Sulaiman JE, Thompson J, Cheung PLK, Qian Y, Mill J, James I, Vivas EI, Simcox J and Venturelli OS. Human gut microbiota interactions shape the long term growth dynamics and evolutionary adaptations of Clostridioides difficile. bioRxiv preprint: doi: 10.1101/2024.07.15.603560 In review. 

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Diaz Rodriguez JR, Lu W, Papadopoulos J, Venturelli OS and Romero PA. Engineered lysins to modulate human gut communities. Submitted bioRxiv preprint: doi:10.1101/2024.05.14.594189

Harmer ZP, Thompson JC, Cole DL, Venturelli OS, Zavala VM and McClean MN. Dynamic multiplexed control and modeling of optogenetic systems using the high-throughput optogenetic platform Lustro. ACS Synthetic Biology

Lan F, Saba J, Ross TD, Zhou Z, Krauska K, Anantharaman K, Landick R and Venturelli OS. Massively parallel single sequencing of genetic loci in diverse microbial populations. Nature Methods https://doi.org/10.1038/s41592-023-02157-7

Qian Y and Venturelli OS. Predicting microbiome phenotypes from genotypes using a tailored deep learning model structure. In review. 

Sulaiman JE, Thompson JC, Qian Y, Hromada SE, Vivas EI, Diener C, Gibbons SM, Safdar N and Venturelli OS. Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes. Nature Communications 15, Article number: 7416.

Quinn-Bohmann N et al. Microbial community-scale metabolic modeling predicts personalized short chain fatty acids production profiles in the human gut. Nature Microbiology 9, 1700-1712. 

Liu Y, Cheng YY, Zhou Z, Vivas EI, Warren MF, Rey FR, Anantharaman K and Venturelli OS. Shaping human gut community assembly and butyrate production by controlling the arginine dihydrolase pathway. bioRxiv preprint: doi:10.1101/2023.01.10.523442. Submitted.